PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g082750.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 179aa    MW: 20734.8 Da    PI: 10.1694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g082750.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.65.8e-141321761659
                         TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  16 kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         + +++ +sYY Ct   + p+k++ve+s++dp+ v++tY+g+Hnh+
  Sopim03g082750.0.1 132 RTNPTGKSYYSCTEVkNYPAKRHVEKSSKDPTKVIVTYRGQHNHP 176
                         678999*******9989***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.65117178IPR003657WRKY domain
SMARTSM007741.3E-6122177IPR003657WRKY domain
SuperFamilySSF1182901.96E-11124178IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-12124177IPR003657WRKY domain
PfamPF031062.1E-9133176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTTLLLLITV FMAMATLLTQ VFFKKKERNC VGDFREAFAV EKKRYFGLDE VISLANNLNT  60
NSRIENRTET IPNTPLVIVE HEEEKKKARY SMQSSTTESG NLFIYRGKIQ ERHEILAEEL  120
SKVDHGRWRK RRTNPTGKSY YSCTEVKNYP AKRHVEKSSK DPTKVIVTYR GQHNHPLP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010318118.11e-122uncharacterized protein LOC104646414
TrEMBLA0A3Q7FKH71e-130A0A3Q7FKH7_SOLLC; Uncharacterized protein
STRINGSolyc03g082750.1.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-11WRKY family protein