PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g078120.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 151aa    MW: 17846.8 Da    PI: 9.6677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g078120.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.21.7e-4541311128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd el+++yLk+k+  kk+ + evi+e++iyk+ P+dLp k ++k+++ ewyfF+++++kya+g + nr+t+ g+Wk tg+d
  Sopim03g078120.0.1   4 LPPGFRFHPTDVELIMYYLKRKIMVKKILF-EVISELNIYKFSPSDLPdKcCYKSKDLEWYFFCPSERKYASGFKMNRTTDIGFWKITGRD 93 
                         79*************************988.99***************6545666777********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++vl  +++ vg  ktLvf++g+ap+ ++tdWv+heyr+
  Sopim03g078120.0.1  94 RRVLY-DEKFVGSVKTLVFHQGKAPRVQRTDWVIHEYRF 131
                         *****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-492140IPR003441NAC domain
PROSITE profilePS5100546.1174150IPR003441NAC domain
PfamPF023659.6E-245130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAKLPPGFRF HPTDVELIMY YLKRKIMVKK ILFEVISELN IYKFSPSDLP DKCCYKSKDL  60
EWYFFCPSER KYASGFKMNR TTDIGFWKIT GRDRRVLYDE KFVGSVKTLV FHQGKAPRVQ  120
RTDWVIHEYR FEDKDTADAG FSLPTLNLIH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-40413115140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384711e-159AC238471.1 Solanum lycopersicum chromosome 3 clone C03HBa0299H10, complete sequence.
GenBankAC2468301e-159AC246830.4 Solanum lycopersicum strain Heinz 1706 chromosome 3 clone slm-5a16 map 3, complete sequence.
GenBankHG9755151e-159HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235079.11e-101NAC domain-containing protein 82-like
SwissprotQ9FY827e-58NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A3Q7G8W91e-100A0A3Q7G8W9_SOLLC; Uncharacterized protein
STRINGSolyc03g078120.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-61NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]