PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g062750.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 123aa    MW: 14427.8 Da    PI: 10.5147
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g062750.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM583.2e-1851133109
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +G+rFhPtd el+ +yLk+  +g+  l+ ++ i+ +diy    Pw++ ++ + +ek  yf ++ +k++ ++kr  r+ ++g+Wk +  +  
  Sopim03g062750.0.1   5 MGIRFHPTDTELI-NYLKRFFKGELcLNKQSPIQFADIYGDqPPWEIFEANSCKEKFRYFITPLRKRKMKDKRFCRTCAKGTWKGQTAEDL 94 
                         7************.9********995444455*******87368***64444466677**************************9999999 PP

                 NAM  92 vlsk.kgelvglkktLvfy 109
                         + ++  g +vg k+ + f 
  Sopim03g062750.0.1  95 IRRNgMGPVVGFKRNFRFE 113
                         9887566779*****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.2283122IPR003441NAC domain
SuperFamilySSF1019415.49E-165113IPR003441NAC domain
PfamPF023651.1E-115115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELCL NKQSPIQFAD IYGDQPPWEI FEANSCKEKF  60
RYFITPLRKR KMKDKRFCRT CAKGTWKGQT AEDLIRRNGM GPVVGFKRNF RFETSVCGQN  120
KT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067530.13e-83NAC domain containing protein 52-like
TrEMBLA0A3Q7FKZ93e-86A0A3Q7FKZ9_SOLLC; Uncharacterized protein
STRINGSolyc03g062750.1.14e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.27e-11NAC domain containing protein 35