PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g042510.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 194aa    MW: 22224.8 Da    PI: 4.1778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g042510.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1620110199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+++lt+ d  +++rl++p  fa++h ++  ++  + le ++g+ Wev++  ++++g+++l+kGW++F++   ++++ +++F+++ r +f 
  Sopim03g042510.0.1  20 FIQILTSLD--ELRRLRIPVVFAKRHCENMLNP--VFLEAPHGKAWEVEV--ENSQGQIWLAKGWSDFCDYYSIRVKSVLMFTYNPRCQF- 103
                         566674444..55679**********4444444..***************..********************************988888. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v ++++
  Sopim03g042510.0.1 104 -SVAIYDQ 110
                         .7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-2112111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1913110IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-1618109No hitNo description
PROSITE profilePS5086311.80118111IPR003340B3 DNA binding domain
SMARTSM010196.8E-920111IPR003340B3 DNA binding domain
PfamPF023622.7E-1322109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MANEFHGSSL RSSSPNNPKF IQILTSLDEL RRLRIPVVFA KRHCENMLNP VFLEAPHGKA  60
WEVEVENSQG QIWLAKGWSD FCDYYSIRVK SVLMFTYNPR CQFSVAIYDQ SKTEIEYPID  120
QDIESDEQEE DILFSQANAN IIEEDILILQ SNANVIEEDI PILQSNANVI EDEEEHIPVN  180
CPQTNANVIE QHK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384760.0AC238476.1 Solanum lycopersicum chromosome 3 clone C03SLm0006J07, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884623.11e-141B3 domain-containing protein At1g49475-like
RefseqXP_025886111.11e-141B3 domain-containing protein At1g49475-like
TrEMBLA0A494GAC91e-132A0A494GAC9_SOLLC; Uncharacterized protein
STRINGSolyc00g011550.1.11e-140(Solanum lycopersicum)
STRINGSolyc03g042510.1.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-16B3 family protein