 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim03g034150.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 203aa MW: 23390.8 Da PI: 9.6308 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim03g034150.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56 | 6.9e-18 | 54 | 107 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq++ Le F + ++ +++++LA++lgL+ +qV vWFqN+Ra++k+
Sopim03g034150.0.1 54 KRKLSQEQVNLLEHSFGDAHRLDMKTKAKLASELGLDLQQVAVWFQNKRARWKN 107
4589************************************************95 PP
|
| 2 | HD-ZIP_I/II | 103.1 | 2.3e-33 | 53 | 144 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kr+ls+eqv+lLE+sF ++L+ + K++la+eLgl+ +qvavWFqn+RAR+k+k+lE +y++Lk++++ e++rLe++ +++e+l+
Sopim03g034150.0.1 53 RKRKLSQEQVNLLEHSFGDAHRLDMKTKAKLASELGLDLQQVAVWFQNKRARWKNKKLEDEYSKLKSQHEITIIEKCRLETQILKMKEQLS 143
8***************************************************************************************998 PP
HD-ZIP_I/II 93 e 93
e
Sopim03g034150.0.1 144 E 144
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MTHHQLDDHQ MVMISQYHPG INTQLALDHQ GEVKPSRRRK KNKGETSNNG VVRKRKLSQE 60
QVNLLEHSFG DAHRLDMKTK AKLASELGLD LQQVAVWFQN KRARWKNKKL EDEYSKLKSQ 120
HEITIIEKCR LETQILKMKE QLSEAKKEIQ RLLLDTNCAR VSSNNNSPIT TSSSIISMEQ 180
PYILENFGME GILMDNNVYF GC*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 36 | 54 | RRRKKNKGETSNNGVVRKR |
| 2 | 38 | 55 | RKKNKGETSNNGVVRKRK |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975515 | 1e-175 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
