PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim03g034000.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 267aa MW: 30575.7 Da PI: 8.1121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim03g034000.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.7e-09	134	181	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sopim03g034000.0.1 134 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 181 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.52E-6	128	185	No hit	No description
SuperFamily	SSF47459	1.7E-15	128	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.958	130	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	130	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	134	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	136	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSILERQRAI FEHLYQCQQQ QQTSNSLPNQ NLAQLNSLMS ENTMEFSQFQ NFPFKIDTQI 60 DFGSEKRNWT SKKRKSEVYE EYECKVERLD GEAGEVKTEM IVKTEKGKNS KENLEAKNTD 120 FIHVRARRGQ ATDSHSLAER ARREKISKKM KCLQDLVPGC NKVIGKAGML DEIINYVQSL 180 QKQVEFLSIK LATSNVNTDN LFAKELPNPT FLQQQGNINI GVTQRRENCL MSFPEAVLDS 240 SNVLALQQLP NLETDLQCLF GVRFQK*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flagellin, jasmonic acid (JA), brassinosteroid and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087, ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-174	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234555.1	0.0	transcription factor BEE 2
Swissprot	Q93VJ4	6e-43	BEE2_ARATH; Transcription factor BEE 2
TrEMBL	A0A3Q7FG06	0.0	A0A3Q7FG06_SOLLC; Uncharacterized protein
STRING	Solyc03g034000.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4000	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36540.1	2e-44	BR enhanced expression 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]