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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim03g033660.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GATA |
Protein Properties |
Length: 296aa MW: 33283.4 Da PI: 9.4449 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim03g033660.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 56.8 | 3.1e-18 | 214 | 248 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
Sopim03g033660.0.1 214 CSHCGVHKTPQWRTGPMGAKTLCNACGVRFKSGRL 248
*******************************9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MLYRTAPHYS SSPLQMNSLE KALKTSYFRP ETAMKMTHNQ PSIDDFFVDN LLDLSNGFAE 60 DEIEQLNEHP NGFNTQNLCS VSPQKKMEDE NGDFGCELSY PENGLDNLEW LSQFVEEDSH 120 SGYSLIGKLP VKKNKSVTEN PVQVNSCFTV PVQTKPRTKR RRIGGRVWSF TGSSTSSASS 180 STITTTAESI VRFPASVSNR RKMKTEKPVQ PRRCSHCGVH KTPQWRTGPM GAKTLCNACG 240 VRFKSGRLLP EYRPACSPTF SSERHSNNHR KVLEMRQKKE ERTGGDRFAP PVHSF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |