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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim03g007640.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 360aa MW: 41141.2 Da PI: 7.5428 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim03g007640.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 82.5 | 4.2e-26 | 198 | 255 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dD+++W+KYGqK++kgs+fpr+Y++C+ ++C+++k +e+s +++k++ + Y++ Hnh+
Sopim03g007640.0.1 198 DDKWAWQKYGQKSIKGSPFPRNYFKCSASNCKATKIIEKSPKNEKYFLVSYSDVHNHD 255
8********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MEDNDWDLSA VVRSCNIIIN KPTNVTASEN DSYTFEKTLD FSVGREKKSN DQVVITNQNQ 60 EMYLHPTQPN QFSEENILPS LPTTVTTGVP TTTTTTTPQE SIYVHQQLEK SNDQVIIMNQ 120 NKNPMMYLEP QFRQQIFLPP LPTTTTPEES VNQQQLVVHD QVYPNITMPV QNSMIRTFKR 180 RDQSPRVFNE VLQEELTDDK WAWQKYGQKS IKGSPFPRNY FKCSASNCKA TKIIEKSPKN 240 EKYFLVSYSD VHNHDPPPSR RSLALYNNIS KRRLPKSINI VPKALKLNAS SSSSSSSSSS 300 KRAKRVKVDA SSTAPKPEIK KNNEMVDDVV ENKGDIIEEE EITYDKIFMD FENSNKLYI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC238467 | 0.0 | AC238467.1 Solanum lycopersicum chromosome 3 clone C03HBa0257N18, complete sequence. |
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |