PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g007380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 354aa    MW: 40062.8 Da    PI: 6.5628
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g007380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29141202159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK++ g+++pr+YYrCt +   gC ++k+v+rs+edp+++e+tY+g+H+++
  Sopim03g007380.0.1 141 LDDGYSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLATKQVQRSDEDPNIFEVTYRGRHTCN 202
                         59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.502136199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-28138202IPR003657WRKY domain
SuperFamilySSF1182903.14E-26140203IPR003657WRKY domain
SMARTSM007741.4E-41141203IPR003657WRKY domain
PfamPF031065.6E-27142201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDNYGADNNS HEINRLVSHE LTQGRDLVQQ LQLHLNAPNS SSSSENTREF LLHNIQFKFD  60
RALSLLQCNT INGDNSNSSL PRSNSPAIPI IGMSDSPRSS EDSDRDLEPK EHHATRKRKS  120
STPRWTKQVQ IQPGAPIEGT LDDGYSWRKY GQKDILGAKH PRGYYRCTLR HVQGCLATKQ  180
VQRSDEDPNI FEVTYRGRHT CNQGGGASVS NVNPAPPPLP LPLVIHQIQE PNIGNHEQYQ  240
QLNQNPNEIL LNFQKSLSIS KDDFNFKNTH HDQPNNVPYI PSFNNYPSSS SNDHQDYNFL  300
NNSSTIPNNI FVESFPPSFN NMSTGTSQQN EADYQFNSMG FESNFPYDYH RFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19141201868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119TRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234275.10.0probable WRKY transcription factor 41
TrEMBLA0A3Q7FDQ30.0A0A3Q7FDQ3_SOLLC; Uncharacterized protein
STRINGSolyc03g007380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-41WRKY family protein