 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim03g006910.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 248aa MW: 28034.1 Da PI: 8.4862 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim03g006910.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 33.5 | 7.5e-11 | 80 | 130 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
h +Er+RR+++ ++ Lr+llP ++K s ++ +A +YIk++q
Sopim03g006910.0.1 80 IIHRDIERQRRQEMAALYSSLRSLLPLqY---VKGKRSVSDHMHEAANYIKEMQ 130
5699***********************66...9*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MFSLQGSDDL LIQILSNTCQ QNKSSLDAVM DFASTDTITR THIPPNINSQ KKIISKRKLS 60
THSNKNDGIA SDDHFKLKKI IHRDIERQRR QEMAALYSSL RSLLPLQYVK GKRSVSDHMH 120
EAANYIKEMQ GNIKELEKRR DLLMKSIRHG NENADKNNRF TDCTVTVSPW LQEGIEISIS 180
VDCEGKTFPL SKILGELLKQ GLNVVSCVSA KADQRSLYSI HTEACDMNNI DHLALQQKVI 240
DMINLDL*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
