PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g005350.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 32417.6 Da PI: 4.8971 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 145 | 189 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el P++ K + a++L + +Y+k L Sopim03g005350.0.1 145 HSIAERLRRERISERIKALQELAPSC-----NKTDRAAMLDEILDYVKFL 189 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-14 | 138 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.23E-10 | 138 | 194 | No hit | No description |
PROSITE profile | PS50888 | 15.535 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-14 | 142 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-6 | 145 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MADNPPEVYA ADDFLEQILA IPSYASLPVT DLTAGASSEN STSGVSQLQQ QPLFPLGLSL 60 DNGFADANNT GGFQVKTERE AMNMGNLYPG LEHLQSHAVC LSVPQVHQVQ PFQGHPTSSA 120 IVTIPHQPAI RPRVRARRGQ ATDPHSIAER LRRERISERI KALQELAPSC NKTDRAAMLD 180 EILDYVKFLR LQVKVLSMSR LGGTSAAAQV VADIPLQSVE GDTCESHSNQ RVWEKWSDSE 240 TEQEVAKLME EDVGTAMQYL QSKSLCIMPI SLAALIYPTQ QSDNQSMVKP EQAAPL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013231 | 0.0 | BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234028.1 | 0.0 | transcription factor UNE12 | ||||
Refseq | XP_010317400.1 | 0.0 | transcription factor UNE12 | ||||
Swissprot | O22768 | 5e-76 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A3Q7FCN7 | 0.0 | A0A3Q7FCN7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g005350.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6421 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 5e-70 | bHLH family protein |
Publications ? help Back to Top | |||
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