PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g093050.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 327aa    MW: 36205 Da    PI: 10.1457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g093050.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.3e-32255312359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Sopim02g093050.0.1 255 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 312
                         99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.0E-18205251IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33241312IPR003657WRKY domain
PROSITE profilePS5081131.031248314IPR003657WRKY domain
SuperFamilySSF1182904.05E-27250312IPR003657WRKY domain
SMARTSM007742.7E-38253313IPR003657WRKY domain
PfamPF031062.8E-27255311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAVELMMDYR STRNNNNTNC INFVAKLEEK SVVQEAASGL ESVEKLIRLL SQSQSQQIQQ  60
QNKSPMEIEM VADAAVTKFK KVISLLDRNR TGHARFRRAP LANNNSPLPS NSSKDFVDTK  120
VYSPTPIQQV PLITYDHFNP LVPKTISFSY SPEMSRTNSF NISSLTGETE SKQHSSSNSA  180
FQMTNLSSQV SNSAGKPPLS SSSLKRKCSL SENAVSGKCS GSSGRCHCSK RRKLRLKRVV  240
RVPAISMKLS DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERALDDPTM  300
LIVTYEGEHN HSLSVAETSS LILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22241313273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333854.10.0WRKY transcription factor IId-4
RefseqNP_001333855.10.0WRKY transcription factor IId-4
SwissprotQ9STX03e-96WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A3Q7FZK00.0A0A3Q7FZK0_SOLLC; Uncharacterized protein
STRINGSolyc02g093050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.11e-70WRKY DNA-binding protein 15