PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g091810.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 319aa    MW: 35734.3 Da    PI: 6.8723
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g091810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13129176355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  Sopim02g091810.0.1 129 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIQYIKELE 176
                         56999***********************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.98126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11129176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-18130191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-13131180No hitNo description
SuperFamilySSF474591.83E-17131194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-15132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDTWWSEMET SNMNDHNFVN QSQAMTQFNE FPFNSKPFST FTPPPPSNVI SNYSYSNSMS  60
TKNQFEKLNT FKVVKHEVPS GTTINFSSSV NSMDDSDFGD IEAAMGFGAA ITTTTDQKKS  120
YNRTSVQAQD HVLAERKRRE RLTQRFIALS TLIPNLKKLD KATVLGDAIQ YIKELEEQVK  180
TLEEKNKKCS EEPVIPPAKR PRLVSSCADS SSSDEISSVS TVCTDRSLPD IEVRASDGNI  240
LIRIYCKKQN GMMKEIFNEV EKLHLSIISC SVMPFGYNTS HITIIAQMDH KLTSNTPNHV  300
ANRIRAAMVK EEANSFTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13130185864Transcription factor MYC2
5gnj_B3e-13130185864Transcription factor MYC2
5gnj_E3e-13130185864Transcription factor MYC2
5gnj_F3e-13130185864Transcription factor MYC2
5gnj_G3e-13130185864Transcription factor MYC2
5gnj_I3e-13130185864Transcription factor MYC2
5gnj_M3e-13130185864Transcription factor MYC2
5gnj_N3e-13130185864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139ERKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316043.10.0transcription factor bHLH18-like
RefseqXP_019068087.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7FCK40.0A0A3Q7FCK4_SOLLC; Uncharacterized protein
STRINGSolyc02g091810.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-42bHLH family protein