PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g091690.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 330aa    MW: 37696.6 Da    PI: 5.7086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g091690.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12164207654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sopim02g091690.0.1 164 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 207
                         589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15161220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9164207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-4165207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELTQEDFLE EIVSPRIENW NNTFANAWNI ESPTFYQQNP EFIPSNSSLL DLIMSPSQSN  60
YFPCPDFQES SYPFLHSFTT TTPPQLVIDS TTYNNNNIQE RAIIEEGQIG HFSTDFHGHY  120
EDSFSCYNIN KVVKMEEATS RIVGEKKSKN YKVKKVEGQP SKNLMAERRR RKRLNDRLSM  180
LRSIVPKISK MDRTSILGDT IDYVKELLDK INRLHEENEI KDIKFLGNFK GLKTNEALVR  240
NPPKFDVERR NEDETSIEIC CGTKPGLLLS TVHTMEALGL EVQQCVVSCF SDFSMRASCS  300
ESVDHRTILS SEDVKQALFK TAGYGGRCV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231971.10.0transcription factor bHLH93-like
SwissprotQ9LSL12e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3Q7FAM50.0A0A3Q7FAM5_SOLLC; Uncharacterized protein
STRINGSolyc02g091690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-79beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]