PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g091030.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 678aa    MW: 76868.5 Da    PI: 4.0537
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g091030.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC99.23.2e-3130130299
               NF-YC   2 lksfwekqiekat..dfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                         l  fw++q e+    d k + e+P++ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+   + f
  Sopim02g091030.0.1  30 LSCFWNQQKEEILraDPKrKPEMPISRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELF 120
                         778*****99865115554779********************************************************************* PP

               NF-YC  90 dflvdivprd 99 
                         dfl divp +
  Sopim02g091030.0.1 121 DFLSDIVPLQ 130
                         *******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.37E-1834131IPR009072Histone-fold
PfamPF008083.3E-951113IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.1E-2252128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MHSSMPSNNK IQQDEDERDP KFMQLLKENL SCFWNQQKEE ILRADPKRKP EMPISRIRRA  60
MKSNDQVKMV SATSTVLLSK AIEMLIMDLT LRAWMQADKG KCRTLKRYDF ARAIRDEELF  120
DFLSDIVPLQ TYKVQKDAND GQGNEPHPAY QVLEPSNIPV EEDANGSQGN EFHPAGQMVQ  180
HQKILVEEAN DVQGNKFDLA NRMVQPHNVP CNFQVQVQAN DGEGYEVHPA YQMVEPNKTS  240
VLKVANDGQG NESNPAYQLV QPNDIAVEED LNGSQGNEFH PVCQMVQPNN IPASFISHRG  300
IPVPLVDLFP EFEFNSHDLL MEEANDVQGN KFHLANQMVQ LQNIPVQGEE NDGQGNEFEP  360
ASNVQPDNIP LLYQFHVRGE ENDAQGNEFN QAFNVQPNNI PLYQFQVRGG ENDYQGNEFE  420
PPSNVQPIYI PQLYQFQVRG EENDGQGNEF DPASNVLPNN NPQLYQFQVR GEENDGQDNE  480
FEPASNVQPN NIPLYQFQVR GEENDGQGNE FNQTSNVFNI PLLYQFQVRG EENDGQGNEF  540
NQAFNVQPDN IPQLYQFQVR GGENDYQGNE FEPPSNVQPI NIPLYQFQVR GGEKDYQGNE  600
FEPPSNVQPI NIPFQVQAEA NDGQGNEFHP TYQMGQPNNI PASFIIPEPL MLPPLINSSP  660
EPEFDIGEFL MDIEEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-195112841118HapE
4g92_C5e-195112841118HapE
5g49_B5e-1937128394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154491e-106AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence.
GenBankHG9754411e-106HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-106HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885465.10.0nuclear transcription factor Y subunit gamma-like isoform X48
TrEMBLA0A3Q7FAB50.0A0A3Q7FAB5_SOLLC; Uncharacterized protein
STRINGSolyc02g091030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139181113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-25nuclear factor Y, subunit C4