 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim02g090950.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 223aa MW: 24768.4 Da PI: 9.5174 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim02g090950.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 26.4 | 1.3e-08 | 126 | 166 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +Av+Y+k L
Sopim02g090950.0.1 126 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 166
699*****************87.....8****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MDLQNIAHSL ELGFSNSNIE MIPLQSPLHN SNYLMNSPPS NFSFMGNPIE EPAAMPILSS 60
IDEIIASTHG NGNDYSCLQR RNSMEAMREM IFRIAMMQPI HIDPESVKPP KRKNVKISKD 120
PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAV HYVKFLKKQL QSLEQAAVNN 180
RPMISGFSTA MSSPGGPMNY NSSSIRACQP HQSMNSGAQM LS*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC215383 | 0.0 | AC215383.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0104A12, complete sequence. |
| GenBank | AC215449 | 0.0 | AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence. |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
