PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g089940.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 727aa MW: 79197.1 Da PI: 7.2199

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g089940.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	517	554	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Sopim02g089940.0.1 517 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 554 664559******************************88 PP
2	BELL	121.4	3.9e-39	378	449	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai q+ Sopim02g089940.0.1 378 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIGAQL 449 589*****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.1E-74	316	447	IPR006563	POX domain
Pfam	PF07526	3.6E-51	321	445	IPR006563	POX domain
PROSITE profile	PS50071	12.568	495	558	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	498	562	IPR001356	Homeobox domain
CDD	cd00086	4.46E-13	498	559	No hit	No description
SuperFamily	SSF46689	5.13E-17	500	565	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	501	564	IPR009057	Homeodomain-like
Pfam	PF05920	3.6E-18	515	554	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MGIATQPITL RPCHKYPVIQ QVVENLNSMS QDYHHHSLFS FPNGFERSQA EQQQHQHQQA 60 QQIRRDKLRV QGFEPFEDET SGLPTVYETA GMLSEMFNFP PGNAATNAAE LLETQFNPNF 120 RQPNPRIHAA AAMGNEWFGN HRQGMVVGGG ASSQPLGYAK NHTDSMQLFL MNPQPRSPSP 180 SPPNSTSSTL HMLLPNPSST PTLQGFPNPA EGSFGQFMTW GNGGASAATA THHLNAQNEI 240 GGVNVVESQG LSLSLSSSLQ HKAEELQMSG EAGGMLFFNQ GGSSTSGQYR YKNMNMGGSG 300 ISPNIHQVHV GYGSSLGVVN VLRNSKYAKA AQELLEEFCS VGRGKLKKNN NKAAANNPSG 360 GANNEASSKD VPTLSAADRI EHQRRKVKLL SMLDEVDRRY NHYCEQMQMV VNSFDLVMGF 420 GAAVPYTALA QKAMSRHFRC LKDAIGAQLK QSCELLGEKD AGTSGLTKGE TPRLKMLEQS 480 LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK HLLARQTGLS 540 RNQVSNWFIN ARVRLWKPMV EDMYQQEAKD EDENSQSQNS GNNIIAQTPT PNSLTNSSST 600 NITTATAAAT TTTAPTTTTA LAAAETGTAA TPITVTSSKR SQINATDSDP SLVAINSFSE 660 NQATFTTNIH DPDACRRGNF SGDDGTTTHD HMGSTMIRFG TTAGDVSLTL GLRHAGNLPE 720 NTHFFG*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MGIATQPITL RPCHKYPVIQ QVVENLNSMS QDYHHHSLFS FPNGFERSQA EQQQHQHQQA  60
QQIRRDKLRV QGFEPFEDET SGLPTVYETA GMLSEMFNFP PGNAATNAAE LLETQFNPNF  120
RQPNPRIHAA AAMGNEWFGN HRQGMVVGGG ASSQPLGYAK NHTDSMQLFL MNPQPRSPSP  180
SPPNSTSSTL HMLLPNPSST PTLQGFPNPA EGSFGQFMTW GNGGASAATA THHLNAQNEI  240
GGVNVVESQG LSLSLSSSLQ HKAEELQMSG EAGGMLFFNQ GGSSTSGQYR YKNMNMGGSG  300
ISPNIHQVHV GYGSSLGVVN VLRNSKYAKA AQELLEEFCS VGRGKLKKNN NKAAANNPSG  360
GANNEASSKD VPTLSAADRI EHQRRKVKLL SMLDEVDRRY NHYCEQMQMV VNSFDLVMGF  420
GAAVPYTALA QKAMSRHFRC LKDAIGAQLK QSCELLGEKD AGTSGLTKGE TPRLKMLEQS  480
LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK HLLARQTGLS  540
RNQVSNWFIN ARVRLWKPMV EDMYQQEAKD EDENSQSQNS GNNIIAQTPT PNSLTNSSST  600
NITTATAAAT TTTAPTTTTA LAAAETGTAA TPITVTSSKR SQINATDSDP SLVAINSFSE  660
NQATFTTNIH DPDACRRGNF SGDDGTTTHD HMGSTMIRFG TTAGDVSLTL GLRHAGNLPE  720
NTHFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	504	561	5	62	Homeobox protein Meis2
3k2a_B	3e-16	504	561	5	62	Homeobox protein Meis2
4xrm_A	3e-16	504	561	5	62	Homeobox protein Meis2
4xrm_B	3e-16	504	561	5	62	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU352654	0.0	EU352654.1 Solanum lycopersicum BIPINNATA (BIP) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232087.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_025885388.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-169	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	B2Y2H0	0.0	B2Y2H0_SOLLC; BIPINNATA (Fragment)
STRING	Solyc02g089940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-151	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]