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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim02g088340.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 461aa MW: 50948.5 Da PI: 6.6382 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim02g088340.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 96.1 | 2.5e-30 | 218 | 273 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
DgynWrKYGqK+vk se+prsYY+Ct+ +C vkkkvers d++++eitY+g+Hnh+
Sopim02g088340.0.1 218 DGYNWRKYGQKKVKASECPRSYYKCTYLKCLVKKKVERSV-DGHITEITYNGRHNHD 273
9***************************************.***************7 PP
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2 | WRKY | 105.5 | 2.8e-33 | 386 | 444 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk+v++tYeg+Hnh+
Sopim02g088340.0.1 386 LDDGYKWRKYGQKVVKGTQHPRSYYRCTYPGCNVRKQVERASTDPKAVITTYEGKHNHD 444
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 461 aa
Download sequence Send
to blast |
MGETGEASAI SFPSLTIPPR PSFESFFNMS SFSPGPMSLV SSFLSDQSPD SADCPPSFSQ 60 LLAGYEYSGD PPGCQKNSGY NQNGSVNPQL FVIPSGLSPS GFLNSPGFLS PLQSPFGMSH 120 QQALAHVTAQ AEFSSSYMQM QMQMQAQDQC SSQVAPVEAL GHELSIDPKE SSLQIKECLQ 180 SSLDNKPSDN QGKQFEQPEV SQSENKTSSG ALDKPACDGY NWRKYGQKKV KASECPRSYY 240 KCTYLKCLVK KKVERSVDGH ITEITYNGRH NHDQPTKRRK NGSALDNTDC FGVRPDISTH 300 DWTVMNSSDG SSPSRSDQVP TQMVSELLVK RECDETESYL IDVDDEGHDE PDAKRTKTAI 360 ETVASSHVTV AESKIVLQTR SEVDFLDDGY KWRKYGQKVV KGTQHPRSYY RCTYPGCNVR 420 KQVERASTDP KAVITTYEGK HNHDIPTVSV RNRGTRNKYS *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB711127 | 0.0 | AB711127.1 Solanum tuberosum StWRKY15 mRNA for transcription factor, complete cds. |