PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g088180.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 320aa MW: 36312 Da PI: 6.9825

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g088180.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.4	5.3e-57	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv ++ + + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke Sopim02g088180.0.1 16 LPPGFRFHPTDEELITHYLAPKVLDSGFCA-IAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCMRDKKYPTGQRTNRATEAGYWKATGKDKE 105 79***********************888.78***********888999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++lvg+kktLvfykgrap+gekt+Wvmheyrl Sopim02g088180.0.1 106 IFK-SKTLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 141 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-63	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.594	16	166	IPR003441	NAC domain
Pfam	PF02365	1.2E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEIVCGFGGR EEEMELPPGF RFHPTDEELI THYLAPKVLD SGFCAIAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCMRDK KYPTGQRTNR ATEAGYWKAT GKDKEIFKSK TLVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LDGKYSIHNL PKTAKNECVI CRIFKKNSGG KKIAISNLTR 180 SDSITDNSRS SNLPPLMDLS PYNKITTTAR SSGETCNSHV TCFSDSMEDQ KPQTYDHHHL 240 LSSSPVSVDF PQNVPNDSMT YMGNFQYGDS GLMQDNSIMR LLIDNNYGSE SKQSLRGYED 300 HDINISSTGP VDIDCLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	3e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT740994	0.0	KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001316319.1	0.0	NAC2-domain containing protein
Swissprot	Q9FLJ2	1e-121	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K4BBX4	0.0	K4BBX4_SOLLC; NAC2-domain containing protein
STRING	Solyc02g088180.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-124	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]