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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g088180.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 36312 Da PI: 6.9825 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.4 | 5.3e-57 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++kv ++ + + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke Sopim02g088180.0.1 16 LPPGFRFHPTDEELITHYLAPKVLDSGFCA-IAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCMRDKKYPTGQRTNRATEAGYWKATGKDKE 105 79*************************888.78***************888999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++lvg+kktLvfykgrap+gekt+Wvmheyrl Sopim02g088180.0.1 106 IFK-SKTLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 141 ***.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-63 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.594 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-30 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEIVCGFGGR EEEMELPPGF RFHPTDEELI THYLAPKVLD SGFCAIAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCMRDK KYPTGQRTNR ATEAGYWKAT GKDKEIFKSK TLVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LDGKYSIHNL PKTAKNECVI CRIFKKNSGG KKIAISNLTR 180 SDSITDNSRS SNLPPLMDLS PYNKITTTAR SSGETCNSHV TCFSDSMEDQ KPQTYDHHHL 240 LSSSPVSVDF PQNVPNDSMT YMGNFQYGDS GLMQDNSIMR LLIDNNYGSE SKQSLRGYED 300 HDINISSTGP VDIDCLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-53 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT740994 | 0.0 | KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316319.1 | 0.0 | NAC2-domain containing protein | ||||
Swissprot | Q9FLJ2 | 1e-121 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | K4BBX4 | 0.0 | K4BBX4_SOLLC; NAC2-domain containing protein | ||||
STRING | Solyc02g088180.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-124 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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