PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g087920.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 384aa MW: 43369.5 Da PI: 6.9082

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g087920.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.3e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ Sopim02g087920.0.1 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 103 579*************************.89***********9888999******************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl Sopim02g087920.0.1 104 IYSSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 141 955666**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-58	11	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	14	173	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDDKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV 120 FYRGRAARGI KTDWMMHEFR LPTTNNESGP PKKFLEKNFP PNDSWAICRI FKKTNSMANR 180 ALSYAWGNPL SEVASPELFN QSANAHFVSE NVSSITETGT ALHLSNNNDL LQGASNVPSY 240 KSLNAMASRP SYLSSPSTDI SYNFMFSSPE VSGQNNRCLL DANSMFFNTS PALITDISKT 300 SESIDFDGSN QQLKMQTSIS MENDEAGLKS NRTSINDNTE WENMRSVGFP FSLAEEWKPS 360 LSWDSPPCPS EISTSFSTNK CYN*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDDKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDST KCIGLKKSLV  120
FYRGRAARGI KTDWMMHEFR LPTTNNESGP PKKFLEKNFP PNDSWAICRI FKKTNSMANR  180
ALSYAWGNPL SEVASPELFN QSANAHFVSE NVSSITETGT ALHLSNNNDL LQGASNVPSY  240
KSLNAMASRP SYLSSPSTDI SYNFMFSSPE VSGQNNRCLL DANSMFFNTS PALITDISKT  300
SESIDFDGSN QQLKMQTSIS MENDEAGLKS NRTSINDNTE WENMRSVGFP FSLAEEWKPS  360
LSWDSPPCPS EISTSFSTNK CYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-53	16	176	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00537	DAP	Transfer from AT5G39820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122544	0.0	AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence.
GenBank	AC226507	0.0	AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence.
GenBank	EU161283	0.0	EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233682.1	0.0	putative NAC domain-containing protein 94
Swissprot	Q9FIW5	1e-100	NAC94_ARATH; Putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	4e-99	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3Q7FAZ8	0.0	A0A3Q7FAZ8_SOLLC; Uncharacterized protein
STRING	Solyc02g087920.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	1e-102	NAC domain containing protein 94

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]