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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g086430.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 20469.2 Da PI: 9.492 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.6 | 6.2e-16 | 106 | 130 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yG++C+FaHg Sopim02g086430.0.1 106 KTELCNKWQETGTCPYGENCQFAHG 130 9***********************8 PP | |||||||
2 | zf-CCCH | 20.6 | 8e-07 | 143 | 168 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ C+yG rC+F H+ Sopim02g086430.0.1 143 YKTEVCRMVLAGDMCPYGHRCHFRHS 168 9**********55**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-19 | 100 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-11 | 101 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-8 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.117 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-13 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-12 | 138 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-9 | 138 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 142 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 142 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGVNRDTQIS DPRPPNIRQG SVVEPNRPER RNTERVSLPK SISVRSSGYL KLKAQGGNTG 60 GPSQAKARQK STVPPLTESQ QRVYVPGSKK EEEALEFDVY NQGMLKTELC NKWQETGTCP 120 YGENCQFAHG ITELRPVIRH PRYKTEVCRM VLAGDMCPYG HRCHFRHSLT EEERRTGPGL 180 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 5e-23 | 106 | 171 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215354 | 1e-172 | AC215354.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0011O23, complete sequence. | |||
GenBank | AC215411 | 1e-172 | AC215411.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0180C05, complete sequence. | |||
GenBank | HG975441 | 1e-172 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-172 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233706.1 | 1e-134 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_015065053.1 | 1e-134 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C9N3 | 4e-61 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A3Q7F861 | 1e-133 | A0A3Q7F861_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g086430.2.1 | 1e-133 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400078583 | 1e-132 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7784 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-60 | C3H family protein |