PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g085910.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 272aa MW: 29509.5 Da PI: 8.0532

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g085910.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.8	5.2e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q Sopim02g085910.0.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPDSQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQ 94 6**************************************************************************************** PP DUF260 87 leqlkaelallke 99 l+q ++e++l ++ Sopim02g085910.0.1 95 LCQNAVEAVLKGT 107 ****9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	3.7E-87	1	269	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.766	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PDSQSNATVF LAKFYGRAGL MNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGTPIT PIASEIAVNN 120 NGPPLKLPYD IRHINKDENS TKSSELHRVR TRCRFKRSGA NTKAKNSNPV CSGSGDELAH 180 EKMNGSTSHE YSLSHQSEEE AAAAAAVAMN VECDSSGMAE VEDSAKDVEL ELTLGFSSLG 240 TVDSKPKETK RNKDVQLVNG AGECKIELRL H*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001334838.1	0.0	LOB domain-containing protein 40
Swissprot	Q9M886	3e-89	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A3Q7F9Y3	0.0	A0A3Q7F9Y3_SOLLC; Uncharacterized protein
STRING	Solyc02g085910.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-90	LOB domain-containing protein 41