PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g085340.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 610aa MW: 66532.8 Da PI: 4.6695 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 356.5 | 3.9e-109 | 241 | 608 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 + L+ecA+ + ++ e++ + L rl+e +s++gdpm+R+ +yf+eAL +rl++ + ++ + t +e + ++k+f++++P+ k Sopim02g085340.0.1 241 LKSLVECARLAE-SEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNRLSS--CQAERTPSIFGT---APEELTLSYKAFNDACPYSK 325 578******655.57888888999******************************..222222333333...36788999************ PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 f+hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s g + +l +tg+rL++fA+ l+++fef++ Sopim02g085340.0.1 326 FAHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPSASLLATGNRLRDFAKLLDLNFEFEP 416 ********************************************88777*********8777889999*********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 + + +++l+ +++rv+p+E laVn++lql++llde+ + + L+l ksl+P +v++ e e+++n+ Fl+rf +al+yys++f+sl Sopim02g085340.0.1 417 -ILTPVQELNGSSFRVDPDEILAVNFMLQLYNLLDETNVGVK---TALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYSTIFESL 503 .799******************************88877777...9********************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv. 359 + +l r+s er+ vEr +lgr+i +v g rre +e +e+W+e +e aGFkpv+ls++a++qak ll +++ s + + ++ ++ Sopim02g085340.0.1 504 DPSLTRDSAERVQVERLILGRRIAGAVGLdDGGTRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQAKILLWNYNySSSFGLIDSAPGFLs 594 ***************************7516778*****************************************9999999888777766 PP GRAS 360 lgWkdrpLvsvSaW 373 l Wkd+pL++vS+W Sopim02g085340.0.1 595 LAWKDNPLLTVSSW 608 ************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.505 | 214 | 587 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-106 | 241 | 608 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ FLGVNPLCLS PWTSNHQTLT 60 NSPTLGYGLT GSGFADPFQV AGGTDSAEPG FQFPNLEHHS TGFRFADFGG GPGGEFDSDE 120 WMESLIGGGD STGSSNLQSG CEAWQTSSEF TTLYGDPFPS CPNRLSIGSA PPPPPSSDLN 180 GVIFSETQKN LSPLQPQTSP WVAPSSSPPP IVQPASKESK VVSVDVQPCS SPESFSSKPL 240 LKSLVECARL AESEPENVVK SLIRLRESVS QQGDPMERVG FYFLEALYNR LSSCQAERTP 300 SIFGTAPEEL TLSYKAFNDA CPYSKFAHLT ANQAILEATE KATRIHIVDF GIVHGIQWAA 360 FLQALATRSA GKPVSVRISG IPSVVLGNSP SASLLATGNR LRDFAKLLDL NFEFEPILTP 420 VQELNGSSFR VDPDEILAVN FMLQLYNLLD ETNVGVKTAL SLAKSLNPSI VTLGEYEVNL 480 NDVGFLQRFK NALKYYSTIF ESLDPSLTRD SAERVQVERL ILGRRIAGAV GLDDGGTRRE 540 CMEDKEHWKE LMEGAGFKPV TLSHYAMSQA KILLWNYNYS SSFGLIDSAP GFLSLAWKDN 600 PLLTVSSWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-148 | 237 | 609 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215358 | 0.0 | AC215358.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0023N04, complete sequence. | |||
GenBank | AC215426 | 0.0 | AC215426.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0215M12, complete sequence. | |||
GenBank | AC215492 | 0.0 | AC215492.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0128E12, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232402.1 | 0.0 | SCARECROW-LIKE protein 7 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A3Q7F8N5 | 0.0 | A0A3Q7F8N5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g085340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8905 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |