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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g084880.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 39733.1 Da PI: 6.3441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.6 | 5.9e-05 | 257 | 296 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L +l+ + +K + a++L++A+ YI+ Lq Sopim02g084880.0.1 257 VRKEKLGDRISALHRLVAPF-----GKTDTASVLTEAIGYIQFLQ 296 57778889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.71E-6 | 244 | 299 | No hit | No description |
PROSITE profile | PS50888 | 11.947 | 246 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 256 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 256 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDSTNLYNHH QLQQLAGYPF FSTGVSTLHD WNSGITSEEE YYYKLGHMKR ISSEELMWKR 60 GIDTFPLMNT SMFHDGHHES SNDPLDDKNN KAGYIISNDY FLKMKDMNSL SNNMFKESYF 120 ENEQQHAFDL NENLLSEDSY MNNANNSSYV SSHDMEYSDF QGLKLAFNGL TFKNSHDSNS 180 NCFGHFTTER MSSGFADGLQ ELTHSPSSKK ITSNVRKNIG VSSKAKRSAE DEANPCQEAS 240 KKSRVTSQSP STLMLKVRKE KLGDRISALH RLVAPFGKTD TASVLTEAIG YIQFLQDQIL 300 TLSMPYSKST ERKLHHINLK DSSIEAVLDL ESRGLCLVPT SFSSYISQSC D* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232434.2 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A3Q7F786 | 0.0 | A0A3Q7F786_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g084880.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13443 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 1e-30 | bHLH family protein |