PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g084350.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 40127.6 Da PI: 4.7648 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.2 | 2.3e-55 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+ Sopim02g084350.0.1 8 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLQdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 97 69****************************.9***************943432233667******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+v++ k++l+g++ktLvfykgrap+g+k+dW+mheyrle Sopim02g084350.0.1 98 DKAVYN-KSKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-60 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.585 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDTNESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI RDIDLYRIEP WDLQDKCRIG 60 YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYNKSKLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLESEE NGPPQEEGWV VCRAFKKKIT GQTKSNNMVE GWESNYFYDE 180 ATTATISSIV DPLEYITRQP PNLSNNNFNN LLCKQETSMD QAAENNLNFS YTNSDQFIQL 240 PQLESPSLPL LKRPISSMSL VSDNNNNNNN NNHDEDGSKN VTADWRALDK FVASQLSHEE 300 TTLYEDDQHN CSDLGMLLLL SDRGEGPKLN EILSSSSEDS DIGICLFDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-51 | 8 | 162 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-51 | 8 | 162 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-51 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-51 | 8 | 162 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232776 | 0.0 | AC232776.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0132H19, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010316409.1 | 0.0 | NAC domain-containing protein 37-like | ||||
Swissprot | Q9SL41 | 1e-157 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | M0ZVN6 | 0.0 | M0ZVN6_SOLTU; Uncharacterized protein | ||||
STRING | Solyc02g084350.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-138 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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