PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g084200.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C3H

Protein Properties

Length: 595aa MW: 65503.6 Da PI: 9.4766

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g084200.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	553	574	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ff + C+ G++C+F H+ Sopim02g084200.0.1 553 RCVFFNKPRGCRNGSSCPFLHD 574 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.934	548	576	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MVSWASGPNL CQVKHYQEED FPSKVSRGSQ HLLQLLQGRL SYNFLAKWKC PPKFNLNEKW 60 RVVAGEESKE AGDQEHREKT VLEVVFPSQS AIPPNPCTSS DLDQNYDDIR TPAIRIIPIE 120 EEADVQVPSR TISSKSPDAC LLNSSSTSVS IVTSQKLPAN EKSLPQSLST LQNPRKPSNN 180 SPLSAKWPSN VQSTLPYLSR CRNLKGSEQN KISPKPPVVP QFQPTFKNIS TQDQTEIYPD 240 QRANQSYGPK DQRICEKQNI PQHKFEVSGM PPAKHNPVTQ HILGSEGDLT VVIATAVAAL 300 AKSQEHDNLI DTNLLVGLLL NPKEIPKLVN ERGLATNAKT SAATIDSLVA VMSRPVDLPV 360 PLPRTKPDQV IIKPINEYQA PHAGPGPILG PRPMAKSVPL TMTKPETSVN SNLVNEQRPP 420 PHVGTANIRE SKSLAHSTSD LNLEKIKKLI NKYGTPDNVG GKPWVKSELV PSSCSKYDVV 480 LPNVGHSYPF SSMTSPTPLH KDINYCKSLI KQHGEICESA VDERLQNTNP RGNYTRVPGL 540 LMNKKQIQCS STRCVFFNKP RGCRNGSSCP FLHDISGQKR SGGILEARDL KRMS*

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MVSWASGPNL CQVKHYQEED FPSKVSRGSQ HLLQLLQGRL SYNFLAKWKC PPKFNLNEKW  60
RVVAGEESKE AGDQEHREKT VLEVVFPSQS AIPPNPCTSS DLDQNYDDIR TPAIRIIPIE  120
EEADVQVPSR TISSKSPDAC LLNSSSTSVS IVTSQKLPAN EKSLPQSLST LQNPRKPSNN  180
SPLSAKWPSN VQSTLPYLSR CRNLKGSEQN KISPKPPVVP QFQPTFKNIS TQDQTEIYPD  240
QRANQSYGPK DQRICEKQNI PQHKFEVSGM PPAKHNPVTQ HILGSEGDLT VVIATAVAAL  300
AKSQEHDNLI DTNLLVGLLL NPKEIPKLVN ERGLATNAKT SAATIDSLVA VMSRPVDLPV  360
PLPRTKPDQV IIKPINEYQA PHAGPGPILG PRPMAKSVPL TMTKPETSVN SNLVNEQRPP  420
PHVGTANIRE SKSLAHSTSD LNLEKIKKLI NKYGTPDNVG GKPWVKSELV PSSCSKYDVV  480
LPNVGHSYPF SSMTSPTPLH KDINYCKSLI KQHGEICESA VDERLQNTNP RGNYTRVPGL  540
LMNKKQIQCS STRCVFFNKP RGCRNGSSCP FLHDISGQKR SGGILEARDL KRMS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226503	0.0	AC226503.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0044J01, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316414.1	0.0	zinc finger CCCH domain-containing protein 68
TrEMBL	A0A3Q7F931	0.0	A0A3Q7F931_SOLLC; Uncharacterized protein
STRING	Solyc02g084200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13292	4	4