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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g081780.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 294aa MW: 33860.1 Da PI: 9.7283 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 3e-10 | 25 | 100 | 17 | 95 |
E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++p f++e+ ++ k++ l +de g We k+ +k+ + ++ ++ W +Fv ++Lk+gD+++F l+++s f +v+ Sopim02g081780.0.1 25 MMPSCFIKENkkMLTKAC---LLKTDEAGMLWEAKIVREKSNNYFICEGEWPQFVVHHQLKQGDVLLFFLVEKSVF--HVH 100 679999999954444444...34477**********76666666888888*******************9987887..544 PP | |||||||
2 | B3 | 33.4 | 8e-11 | 204 | 275 | 13 | 87 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + +++pk+fa+ g+ + ++ +++ + e+ W+v++ sg++ +tkGW F n++ gD++ Fkl++ Sopim02g081780.0.1 204 KTFMTIPKRFAKMTGIFSMKN--MKVVNeEKKGYWRVEI--VDMSGTIRITKGWAAFRTYNKIVCGDSCRFKLIKP 275 3459*******8887665555..55445377799*****..99999**************************9873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-13 | 4 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-13 | 6 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.11E-10 | 9 | 100 | No hit | No description |
SMART | SM01019 | 3.6E-6 | 11 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-8 | 25 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.364 | 26 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-15 | 187 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-16 | 189 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.953 | 192 | 286 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.83E-8 | 193 | 277 | No hit | No description |
SMART | SM01019 | 0.0012 | 195 | 286 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-8 | 203 | 275 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MLMDSDNTPA FCKLLQFGEV FISKMMPSCF IKENKKMLTK ACLLKTDEAG MLWEAKIVRE 60 KSNNYFICEG EWPQFVVHHQ LKQGDVLLFF LVEKSVFHVH PYTRKCRRNI RDEKKKLFYQ 120 QLSSTSSSSS SEEVEIGPDR KVNSTDEESV DEDDSPCYKN PKQENLSDDG GGGNGSKKFR 180 GGSSMMNFKT DHPYYEMVVK RSHKTFMTIP KRFAKMTGIF SMKNMKVVNE EKKGYWRVEI 240 VDMSGTIRIT KGWAAFRTYN KIVCGDSCRF KLIKPNTLQV QKVPKHASLK SYH* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215475 | 0.0 | AC215475.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0021D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065617.2 | 0.0 | B3 domain-containing protein At5g18000-like | ||||
TrEMBL | A0A3Q7F6H3 | 0.0 | A0A3Q7F6H3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g081780.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4888 | 13 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 3e-09 | VERDANDI |