PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g080860.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 254aa MW: 28345.9 Da PI: 6.8886

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g080860.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	43	96	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ Sopim02g080860.0.1 43 PRLRWTHDLHRCFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 96 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.755	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-32	39	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-16	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.9E-25	43	97	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	44	95	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MMNELHPFSD NSPSNLSMKQ PIMLENTNNN KSGVRPYVRS KMPRLRWTHD LHRCFVHAVE 60 RLGGEDRATP KMVLQLMDVK GLTISHVKSH LQMYRSMKHE QLMQAVAEAA NGSKSNKMDG 120 PDQVHYPHGN FLHHYYNGHP NSTITSTYSD HIASTPAFIP PAPWRPMPKK MMGLEGRLDP 180 ACNMFRDFFN GCTTVQDGSV GDQYGSSLSN KHFSIIDTEE EAEDSGSITM FAQPSAGLED 240 VNNNNISLDL TLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	44	99	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	44	99	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	44	99	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	44	99	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	44	99	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-107	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233787.1	0.0	myb family transcription factor EFM-like isoform X1
TrEMBL	A0A3Q7F7B8	1e-120	A0A3Q7F7B8_SOLLC; Uncharacterized protein
STRING	Solyc02g080860.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	3e-34	G2-like family protein