PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g079020.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 1044aa MW: 114546 Da PI: 6.1573 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.5 | 2.9e-19 | 321 | 420 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Sopim02g079020.0.1 321 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGLPLKMQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRIE- 409 89**************************444556667***************9989999999***9.********************887. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++lv++ ++ Sopim02g079020.0.1 410 PEGKLVMGCRK 420 56656665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-30 | 317 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-19 | 318 | 416 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.66E-23 | 319 | 420 | No hit | No description |
Pfam | PF02362 | 2.4E-16 | 321 | 420 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.096 | 321 | 422 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-23 | 321 | 421 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.876 | 575 | 625 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.2E-10 | 580 | 622 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1044 aa Download sequence Send to blast |
MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILPERIKDV NNWNPIAGSG 120 PVPWRQAPSL FNGSTNQNEL QHKAPFPEAT VSIDRLSLGE RPFALLSDNN RKDSCEKLMN 180 GKLKIGVPGT PEDGYAGSNR DEAHKSCLSA PWQSSYANSE LSAPSFCLTV GSASKNEPTV 240 HSKVSVSVPQ KTTLSIPLPL GKQLGGHATV DSAGETQVKS SKIRGDGRGK NQLLPRYWPR 300 ITDQELRRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKM 360 QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRIEP EGKLVMGCRK 420 ASNILTADQG SEACSNGNGV ATNGNASTKH TKSSEEVLAN STKKGSSSTT LVAATSARAE 480 IKMSDDLVNE SLGTNRPIRC KRKGSTMGSK RKRMRIDNDN LVELKVTVVQ AQGLMRPPSS 540 GAPTVIVIEG CEFEEYEQED APIIGRPTIP HMDQLGEKIQ WVQCEDCFKW RKVPDNVDLP 600 SRWTCSDNSC DPERSVCSAV QELTADHLRD LLPHINKASK KRKASKQEMD LVETLDGLDA 660 LAHLAILEEG ETLPASPQAT TKHPRHRPGC TCIVCIQPPS GKGPKHKQSC DCNVCKSVKR 720 RFKTLMMKRE KKLSEKEAEA TCQKLQPQSA GQLLDADDIQ EPIDDAVHSS PQHEELNIEG 780 SVDPNYLNEK KSSVEDPNYL DEKKSSVDDT NYLSEKISSV DDPSYLNEKE SSVDDPNILN 840 EKKSSVDDPN CLNEKKSAVD DPNYVDERKS SVDDPNCLKE KKSSASPFKG EFDLNAKPDR 900 DDELSPGSDS GSMMRMIKRA AEQYVRHCDN GSSVGNQRDG DGAGETNPGN CVIVSGSHQA 960 DVDHNRPLPI SAAASLAPND QLHFAMAASM SETHKFWESN GDLNLEIVLE EQPLVTERRV 1020 LSIVYMVVSL LDLIWDSKLV GLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-62 | 299 | 423 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215441 | 0.0 | AC215441.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0329G05, complete sequence. | |||
GenBank | AC215472 | 0.0 | AC215472.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0019I01, complete sequence. | |||
GenBank | AC215491 | 0.0 | AC215491.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0114O11, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010316688.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X3 | ||||
Swissprot | Q0D5G4 | 1e-175 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1U8FW70 | 0.0 | A0A1U8FW70_CAPAN; B3 domain-containing protein Os07g0563300 isoform X3 | ||||
STRING | Solyc02g079020.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-152 | high-level expression of sugar-inducible gene 2 |