PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g077610.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 293aa MW: 33097.4 Da PI: 8.8762

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g077610.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.2	9.5e-34	56	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+P+d e++ e+L++kv +++++++ +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Sopim02g077610.0.1 56 LPAGVKFDPSDGEIL-EHLEAKVLSDNHKIHPliddfilTIDGQnGICYTHPQKLP-GVNKDGQVRHFFHRPSKAYTTGTRKRRKVHteid 144 799*********9.99*99995553344444433665546******.667777888**************7444466 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Sopim02g077610.0.1 145 ggETRWHKTGKTRPVYI-SGVVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 196 55778********.999*******66589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.15E-38	49	215	IPR003441	NAC domain
PROSITE profile	PS51005	32.83	56	215	IPR003441	NAC domain
Pfam	PF02365	2.7E-14	57	196	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAWCSQSTVL PIISSSDQEN NVIMVTSKTR FITCPSCGHN IQLQHQRGIL HDLPGLPAGV 60 KFDPSDGEIL EHLEAKVLSD NHKIHPLIDD FILTIDGQNG ICYTHPQKLP GVNKDGQVRH 120 FFHRPSKAYT TGTRKRRKVH TEIDGGETRW HKTGKTRPVY ISGVVKGYKK ILVLYTNYGR 180 QRKPEKTNWV MHQYHLGENE EEKDGELVVS KVFYQTQPRQ CGSSTIKKTI DHSNNIINPL 240 LKTTNFVDYY NPNPFVSYNV ESQSSPHELI QNLVVHGDGS SFVIPSEASK EK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316779.1	0.0	NAC domain-containing protein 73
Refseq	XP_025885167.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-117	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A3Q7FQE6	0.0	A0A3Q7FQE6_SOLLC; Uncharacterized protein
STRING	Solyc02g077610.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-119	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]