PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g077360.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 259aa    MW: 30027.6 Da    PI: 4.6914
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g077360.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19113163255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Sopim02g077360.0.1 113 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFSTAEEAAMAYDKAALRIRG 163
                         6********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-23113173IPR016177DNA-binding domain
PfamPF008472.4E-14113163IPR001471AP2/ERF domain
PROSITE profilePS5103223.933113171IPR001471AP2/ERF domain
CDDcd000188.77E-32113172No hitNo description
SMARTSM003802.0E-37113177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31113172IPR001471AP2/ERF domain
PRINTSPR003674.6E-11114125IPR001471AP2/ERF domain
PRINTSPR003674.6E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MITHHVENNN QEQDQVACEE ILENVWANFI SKNDQNSQKV TNEYCCEQYW EQLPILERLP  60
SLGRWISMGA ETWEDILNGI IIPSHNNENS NDESTCKDVV NVEKKEEKKK MVHYRGVRRR  120
PWGKYAAEIR DSSRKGARVW LGTFSTAEEA AMAYDKAALR IRGPKAYLNF PHEMVAQAIG  180
ISNGPCEKEW TFSSSSQYNS RKRVSRDWNM YENLDEINQL PMEKKIMRSM EEDLFNDLDI  240
LEFEDLGSDY LDSLLSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28113171260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103120KKEEKKKMVHYRGVRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233843.20.0ethylene-responsive transcription factor 1B
TrEMBLA0A3Q7F5C00.0A0A3Q7F5C0_SOLLC; Uncharacterized protein
STRINGSolyc02g077360.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-27ERF family protein