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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim02g071730.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 249aa MW: 28723.6 Da PI: 9.966 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim02g071730.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 97.7 | 4.8e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
Sopim02g071730.0.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYA 74
79***********************************************8 PP
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2 | K-box | 112.7 | 3.6e-37 | 92 | 189 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
+s++ s++ea+a+++qqe++kL+++i nL +++R+++Ge L ++lkeL++Leq++ek+++kiRskKnell+++ie++qk+e +l+++n++
Sopim02g071730.0.1 92 SSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQY 182
3445559************************************************************************************ PP
K-box 94 Lrkklee 100
Lr+k++e
Sopim02g071730.0.1 183 LRAKIAE 189
****986 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.445 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.30E-45 | 18 | 94 | No hit | No description |
SuperFamily | SSF55455 | 6.15E-33 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.6E-27 | 101 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.55 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048366 | Biological Process | leaf development |
GO:0048440 | Biological Process | carpel development |
GO:0048443 | Biological Process | stamen development |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LVVFSNRGRL YEYANNSVKA TIERYKKACS DSSNTGSVSE ANAQYYQQEA SKLRAQIGNL 120 MNQNRNMMGE ALAGMKLKEL KNLEQRIEKG ISKIRSKKNE LLFAEIEYMQ KREVDLHNNN 180 QYLRAKIAET ERAQHQHQQM NLMPGSSSNY HELVPPPQQF DTRNYLQVNG LQTNNHYPRQ 240 DQPPIQLV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6byy_A | 9e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 9e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 9e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 9e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |