PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g070140.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 196aa MW: 23428.5 Da PI: 9.7105 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.4 | 2.6e-10 | 12 | 132 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 d++++++ + +k +k+++ ++++ +i + P+++ +++++ ++k++ + ++++k+++ + + + ++g+Wk tgk ++++ +++l Sopim02g070140.0.1 12 DKNMMDYVIDNKPFPHKHTI-MKVDDIyGIRMFTPSQIFQSTEEpKNKNVRYLITNQKNERARSSA-YKDSRGVWKFTGKIDSIFDPNKRL 100 55555554555544444444.2244544677889****7554442444444444444433333333.34568**************98888 PP NAM 100 ...vglkktLvfykgrapkgektdWvmheyrl 128 v + + + +y +++++ k++W m ey + Sopim02g070140.0.1 101 lgyVKISRWFYYYGEKNKRIIKSEWHMREYYV 132 455556667888888999999*********75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.206 | 2 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-10 | 27 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MDKINEYWKS TDKNMMDYVI DNKPFPHKHT IMKVDDIYGI RMFTPSQIFQ STEEPKNKNV 60 RYLITNQKNE RARSSAYKDS RGVWKFTGKI DSIFDPNKRL LGYVKISRWF YYYGEKNKRI 120 IKSEWHMREY YVTPTINSRY NVDKKGVIFV MMFKNQKRND NDNNIDQDDE TPGQLDDHQD 180 FVANQITQSL QGIHL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215361 | 0.0 | AC215361.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0026M05, complete sequence. | |||
GenBank | AC215482 | 0.0 | AC215482.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0064E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010317351.1 | 1e-142 | uncharacterized protein LOC101263670 | ||||
TrEMBL | A0A3Q7F292 | 1e-141 | A0A3Q7F292_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g070140.1.1 | 1e-141 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA26813 | 2 | 2 |