PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Sopim02g067800.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 169aa MW: 18799 Da PI: 8.3529

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g067800.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.1	1.3e-42	16	114	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC ++Cv+apyfp e+p kf vhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ Sopim02g067800.0.1 16 PCAACKFLRRKCLPSCVFAPYFPPEEPIKFTTVHKVFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQ 106 7**************************************************************************************** PP DUF260 92 aelallke 99 +el+++++ Sopim02g067800.0.1 107 KELDATNA 114 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-42	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MFIQDMSSTS NYSTPPCAAC KFLRRKCLPS CVFAPYFPPE EPIKFTTVHK VFGASNVSKL 60 LNEIQPHQRE DAVNSLAYEA EARLKDPVYG CVGAISVLQR QVLRLQKELD ATNADLMRYA 120 NNNNNNNNNF QYGRRMVNSG YYNYSSAWNN GISGGHNNIG TDNCDGGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-64	7	120	2	115	LOB family transfactor Ramosa2.1
5ly0_B	8e-64	7	120	2	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233326.1	1e-120	LOB domain-containing protein 25
Refseq	XP_010317090.1	1e-120	LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A3Q7F113	1e-116	A0A3Q7F113_SOLLC; Uncharacterized protein
STRING	Solyc02g067800.2.1	1e-124	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-69	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]