PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g067320.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 332aa    MW: 36516.5 Da    PI: 7.9437
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g067320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.6e-3353110359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          v+YkeClkNhAa+lG+havDGCgEf+p + ++ +++++lkCaACgCHRnFHRre+ee
  Sopim02g067320.0.1  53 VVVYKECLKNHAANLGTHAVDGCGEFLPIPAANpADPTSLKCAACGCHRNFHRREPEE 110
                         589***************************9999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2754108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2156106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.90556107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-2956107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.13E-16180247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27184248IPR009057Homeodomain-like
TIGRFAMsTIGR015657.9E-25190246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELNINTNTT AAITTVKTPE LAETETPSRI QQPKPFSFSN GVLKRKNHHH PVVVVYKECL  60
KNHAANLGTH AVDGCGEFLP IPAANPADPT SLKCAACGCH RNFHRREPEE PPPIATAAIE  120
YQPHHRHHPP PPRGDHGSPN SPSPPPISSA YYPASAPHML LALSAGFSGE KNQNLPTSTT  180
PMAVANSNGR KRFRTKFTPD QKIKMLEFAE KVEWKMQKRD EDLVNNFCNE IGVEKGVLKV  240
WMHNNKTTSI SGKKLDQPNT DNGHNHQNGN SNYTVNGFCI VDRNNTTHHH DNTDSEFHIH  300
HESSMNDDNK KENSSFGANN VVVTNGSSSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181912511878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233362.10.0zinc-finger homeodomain protein 9
SwissprotQ9LXG06e-69ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A3Q7F0100.0A0A3Q7F010_SOLLC; Uncharacterized protein
STRINGSolyc02g067320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.18e-61homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]