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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g064630.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 320aa MW: 34678.5 Da PI: 7.5957 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.9e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v+++G g W+tI + R+ ++k++w+++ Sopim02g064630.0.1 5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfavvlRSRSNVDLKDKWRNL 56 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.237 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.84E-16 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.90E-21 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 1.14E-14 | 117 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 1.1E-14 | 117 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 21.719 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 1.1E-14 | 122 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.5E-10 | 124 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAVV LRSRSNVDLK DKWRNLHVMA 60 SGWGSRHRGK IVSKSAQPTP KHDDSTLVSY VSENDRDIPD VKPLASTGDE LKDVGSKRPL 120 SRLDDLILES IAKLKESRGS SRNAISSYIE ERYVAPLNFE RLLAANLKVL TEKGRLIKVK 180 HHYRIAPNRA SSDGKGGPFS LPMGGKLDST MVEKNETRVL TKEQIDADLE QMKSMSAEEA 240 AAAAAQAVAE AEVAIAEAEQ AARIAEEYEA EAEAAQCFAE VASKALQHQT ILVCLMGLSG 300 STARVFIFST VGNLLLICG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014455 | 0.0 | BT014455.1 Lycopersicon esculentum clone 133802R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019067738.1 | 0.0 | single myb histone 6 isoform X1 | ||||
Refseq | XP_019067739.1 | 0.0 | single myb histone 6 isoform X1 | ||||
Refseq | XP_019067740.1 | 0.0 | single myb histone 6 isoform X1 | ||||
Refseq | XP_019067742.1 | 0.0 | single myb histone 6 isoform X1 | ||||
Refseq | XP_025885033.1 | 0.0 | single myb histone 6 isoform X1 | ||||
Refseq | XP_025885034.1 | 0.0 | single myb histone 6 isoform X1 | ||||
TrEMBL | A0A0V0IBG0 | 1e-164 | A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like | ||||
STRING | Solyc02g064630.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5122 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 5e-63 | telomere repeat binding factor 1 |