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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim02g063430.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 322aa MW: 36218.2 Da PI: 5.3228 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim02g063430.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.6 | 1.9e-12 | 153 | 196 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L
Sopim02g063430.0.1 153 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 196
589*********************66......****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MELSEHDILE ELLALPRKES LNDFLPHGNG WTFESPLPFY QNPEFIALNS SLLGLISPPI 60
TTSHSNFPDF TSPESYQFLD SSFTGTPLLD DYSVMENHEE FGGIIPGDFH GLQQELNSFG 120
DVKVEESNSR LMGNVGEKKS KIRKMEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM 180
DRTSILGDAI DYMKELLEKI HALREDDNVK DEIKDIKFVG NFKELKPNEA LVKKPPKFEV 240
ERRNADTRIE ICCSAKPGLL LSTVSTLEAL GLDVQQCVIS CFSDFSLQAS CSEAREHRTI 300
LSGEDVKQTL FKTAGFGGRC L*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 155 | 162 | ERRRRKRL |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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