PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g063010.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BES1
Protein Properties Length: 320aa    MW: 34474.9 Da    PI: 9.7295
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g063010.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822211.42.3e-6591531149
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         g+sgr ptwkErEnnkrRERrRRaiaaki++GLR qGn+klpk++DnneVlkALc eAGw+vedDGttyrkg +p+   e +  s ++s +
  Sopim02g063010.0.1   9 GSSGRLPTWKERENNKRRERRRRAIAAKIFTGLRTQGNFKLPKHCDNNEVLKALCIEAGWIVEDDGTTYRKGHRPP-PIENGCVSMNISAS 98 
                         689*************************************************************************.999999******** PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                         ss+q s+ ss+++spv+sy+asp+sssfpsps+ d ++++    +lp+l++l++++s+
  Sopim02g063010.0.1  99 SSIQPSPMSSSFPSPVPSYHASPTSSSFPSPSRCDGNPSS---YILPFLHNLASIPST 153
                         *************************************985...999***999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.7E-6110134IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTAGTGGGGS SGRLPTWKER ENNKRRERRR RAIAAKIFTG LRTQGNFKLP KHCDNNEVLK  60
ALCIEAGWIV EDDGTTYRKG HRPPPIENGC VSMNISASSS IQPSPMSSSF PSPVPSYHAS  120
PTSSSFPSPS RCDGNPSSYI LPFLHNLASI PSTLPPLRIS NSAPVTPPLS SPTRRSKPPK  180
PLWESLSRVP LNSFQHPLFA ASAPSSPTRR RYSKPATIPE CDESDAASVE SARWVSFQTV  240
AAPTSPTFNL VKPLPQQNIL LDALSGHGMV GWGETAAQKG HGAEFDFESC KVKAWEGERI  300
HEVAVDDLEL TLGSAKARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-241387372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135920.0BT013592.1 Lycopersicon esculentum clone 132355R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233505.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-103BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A3Q7EYU00.0A0A3Q7EYU0_SOLLC; Uncharacterized protein
STRINGSolyc02g063010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94862128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.61e-75BES1 family protein