PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g062070.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34519.9 Da PI: 4.8295 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.2 | 2.6e-09 | 16 | 80 | 60 | 128 |
NAM 60 fFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 F++ ++k+++gk+ nr + g Wk ++++v++kkg +g kkt+ f ++ + W+m+eyrl Sopim02g062070.0.1 16 NFVTVKEKKRNGKNFNRgiVGGGGSWKGVNNSRPVYNKKGLMIGFKKTFRFD--EN----NHVWFMKEYRL 80 5888889999*******74445899**************************7..22....458******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.349 | 1 | 107 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-12 | 17 | 107 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-5 | 29 | 80 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGMNFDDEGL LNYLINFVTV KEKKRNGKNF NRGIVGGGGS WKGVNNSRPV YNKKGLMIGF 60 KKTFRFDENN HVWFMKEYRL CDKLLEDLRL HGKIRYEDYV LCSIRMKVNW GHFRQNLLAS 120 SSSQCQETVK SSAANVIPSD QLNSTLNGNI RPVTLVFKES NVTQWPATIQ EECFVPVIHQ 180 EIPSVSFGAI EEDCSVPVVH PETHSVSFAA TEEECSVPVV HQEIPSVSFV AKESNVSASK 240 EVEECSVPVE TRPDNDIATY HKELDAYAAS ILETMVPYIP EVQEDEDDIP LFSEDFYIGH 300 TNLWS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010317372.1 | 0.0 | uncharacterized protein LOC104646073 | ||||
TrEMBL | K4B697 | 0.0 | K4B697_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g062070.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |