PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g060560.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 20994.8 Da PI: 3.5316 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 87 | 108 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+++F + ++ rH++tH Sopim02g060560.0.1 87 TCFACDMVFDTMILFLRHMQTH 108 6999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MANSLENVSP LSSPPPSPPQ VCDEEATPPA GTEVPSVGAL PRKRGLMVNG GEGTSEDRAK 60 RANVEPPVSA PAPAPAPAPE PPVLERTCFA CDMVFDTMIL FLRHMQTHQV LETSYVPDLN 120 QDQVPNWTPP YEAIASPDDD NSSDISVDDE TADADAGAAD ADVPAAPREP VYLLPDLNLP 180 APEEDEDEDD EDDVDDE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7EYR3 | 3e-78 | A0A3Q7EYR3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g060560.1.1 | 1e-135 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14808 | 3 | 5 |