PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g055370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 123aa    MW: 14573.5 Da    PI: 4.7154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g055370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.6e-131489590
                        -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                              +k+g l +p  f+ ++     + +  +  + +++ ++W vk+  ++++   + ++ W eFv++ +Lk+gD++vFk++g++ef
  Sopim02g055370.0.1 14 I--LPGFKNG-LKIPLGFL-KYlkR--HDQ-HEHAILTTDDKKWLVKV--NGRR---LEEGSWIEFVEELNLKVGDVLVFKHEGDMEF 89
                        5..4566666.*******9.77332..333.366777889********..7777...67899*******************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-18397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-18397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771797IPR003340B3 DNA binding domain
CDDcd100175.30E-11895No hitNo description
SMARTSM010191.3E-121097IPR003340B3 DNA binding domain
PfamPF023621.3E-91889IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPGFKN GLKIPLGFLK YLKRHDQHEH AILTTDDKKW LVKVNGRRLE  60
EGSWIEFVEE LNLKVGDVLV FKHEGDMEFD VFKFDLSHHC DKEYAMYQEE DEDEDEEDED  120
KL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468121e-169AC246812.6 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone sle-35o15 map 2, complete sequence.
GenBankHG9755141e-169HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231728.12e-83B3 domain-containing protein REM5-like
TrEMBLA0A3Q7FIV94e-82A0A3Q7FIV9_SOLLC; Uncharacterized protein
STRINGSolyc02g055370.2.17e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.16e-15B3 family protein