PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g032180.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 288aa MW: 31669.5 Da PI: 5.0201 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 39.2 | 1.7e-12 | 152 | 199 | 2 | 51 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseas 51 +eqd+++P nv+rim+ + P + is+d k+t+ +c+sefi fvt e++ Sopim02g032180.0.1 152 QEQDQVIP--NVARIMHSTHPPHIMISDDVKQTMYHCISEFICFVTYETN 199 57888877..************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.74E-6 | 134 | 199 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-9 | 151 | 199 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-7 | 160 | 199 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEALDHFSKV TALMADLDKS NIFIAGVGEA VKQNIRLTTG FSVGTHPIKY LGLPLTSKNV 60 ANGTLLQSGN SCGKLLSKKH IPYKESFERE VYLYRQSEMD NGNHVGGSGN GGFHSYHRSP 120 QPTSVDPPSL DMEMSLELPA HLNQEVVEII IQEQDQVIPN VARIMHSTHP PHIMISDDVK 180 QTMYHCISEF ICFVTYETNA FEDDGGECRS HTRESLLKRP MVDTASSSNI TPYNLPPIFP 240 MAHDHFFFSP PMGNGDIQGD APNGSTSQCA VASMDSDVES PKEEDKE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-142 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075904.1 | 1e-105 | nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A3Q7EYU2 | 1e-108 | A0A3Q7EYU2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g032180.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA26693 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 3e-09 | NF-YB family protein |