PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g032070.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 109aa    MW: 11958.1 Da    PI: 4.0335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g032070.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48e-167683499
                        SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         t +l  +sg++W v l   +++++ ++ +GW +Fvk++ L++gD++vF++d +  f   v+vf++
  Sopim02g032070.0.1  7 GTTVLVGPSGNVWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDADLHF--IVQVFDE 68
                        478899***********..99999**************************9886666..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.676169IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-19574IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-13668IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17671IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-16667No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEGGDSGTTV LVGPSGNVWP VDLIQQDDGL FFNNGWVSFV KDHCLETGDS LVFRYDADLH  60
FIVQVFDESS CDKEASYNTD CSQEATDLYN LALKKRDRGN SVLGNEKT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069240.12e-63B3 domain-containing protein Os01g0723500-like
RefseqXP_027772493.11e-63B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A3Q7FHN53e-74A0A3Q7FHN5_SOLLC; Uncharacterized protein
STRINGSolyc02g032070.1.15e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.18e-10B3 family protein