PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g111130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 334aa    MW: 37201.4 Da    PI: 6.729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g111130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-1057106154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r++ +  rE+ RRdr+N+ f eL + l ++     +K++Ka+iL  +v+ +k+L
  Sopim01g111130.0.1  57 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQILKDL 106
                         5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-1156128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.26256106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-857106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1257122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-757111No hitNo description
SMARTSM003534.6E-762112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDQFNHGGLY QSNQLPNHCL TELNQLPSDV STPPNGLLSE SSKQKPEAEL KDSIAARKVQ  60
KADREKLRRD RLNEQFMELG KTLDPDRPKN DKASILSDTV QILKDLTAQV SRLKSEYAAL  120
TDESRELTQE KNDLREEKAS LKSDIESLNA QYQQRMRTMY PWAGMDHSMV MHPPSYPYPM  180
PVPIPTGPVP MHPPLQPYPF FGNHNPAVVP NPSSFVQYMT PNTLIEQQPT QYMSPIIQPG  240
SMTRQESRNK SSDQGESRIE KSEDSNEVAT DLELKTPGST SEQDLSSGQK KSRKLPRKDN  300
SFTDGSSSSK CSSSHSVHAV SSNSVVRGTK TGD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2408540.0AC240854.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-25n22 map 1, complete sequence.
GenBankAC2408590.0AC240859.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-138h16 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230930.10.0transcription factor bHLH121 isoform X2
SwissprotQ9LT238e-88BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A3Q7EUG30.0A0A3Q7EUG3_SOLLC; Uncharacterized protein
STRINGSolyc01g111130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.27e-82bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]