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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g110490.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 77361.6 Da PI: 7.2007 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 117 | 140 | 6 | 26 |
-SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 6 CrffartG...tCkyGdrCkFaHg 26 C+ a++ C+yGd+C+F+H+ Sopim01g110490.0.1 117 CPVVAKSRkvsACSYGDKCRFSHD 140 666666666668***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.662 | 116 | 142 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.291 | 155 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.20.20.70 | 1.4E-71 | 346 | 589 | IPR013785 | Aldolase-type TIM barrel |
SuperFamily | SSF51395 | 1.34E-62 | 350 | 663 | No hit | No description |
CDD | cd02801 | 3.72E-90 | 350 | 585 | No hit | No description |
Pfam | PF01207 | 4.8E-51 | 353 | 620 | IPR001269 | tRNA-dihydrouridine synthase |
PROSITE pattern | PS01136 | 0 | 434 | 452 | IPR018517 | tRNA-dihydrouridine synthase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008033 | Biological Process | tRNA processing | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
METETLVDEL PVATATAVAQ PETPLQPTSS NAADGGVSEE FLTPEELVAK SKAPVKREYL 60 RPPPSRPSTN NNNNTTVGVE NDDAAEAKRA PLLKDKKSKR QIKRERREEQ KSPLHLCPVV 120 AKSRKVSACS YGDKCRFSHD VEAFKAVKPA DIEGSCPFLD YEGPCPYGLA CRFAGTHRDN 180 VSAPSENLPG KSSELNFFSK DTQKLLWKNK MKFPKAEATL KLLGLKGNPK DKTLADNVEN 240 GQVTPKEPAT DTKTDSNVVA NDSVSPSISP EDDVDGNNLA DDARPLKKAK SSVSEICPSQ 300 VSSGLSVQGG VPDDNFGVNK SEPTADTMTD SDKSLKLHPR EKKLIDFRDK LYLAPLTTVG 360 NLPFRRVCKV LGADVTCGEM AMCTNLLQGQ AAEWALLRRH SSENLFGVQI CGAFPDTITK 420 TVELIEQECS VDFIDINMGC PIDVVVNKGA GSALLTKPMR MKSVVEAASS TVSTPVTIKV 480 RTAYFEGKNR IDSLIADMGS WGATAVTIHG RSRQQRYSKP ADWDYVYQCA RKAPKSLQVL 540 GNGDVFSYVD WNNHKIECPE LSTCMIARGA LVKPWIFTEI KEQRHWDITS GERLDILKDY 600 ARFGLQHWGS DSKGVDTTRH FLLEWLSYTC RYIPVGLLDI IPQKINWRSP SYYGRDELET 660 LMASDSAADW VRISELVLGK VPSGYSFAPK HKSNAYDRAE NG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ei9_A | 5e-26 | 347 | 594 | 27 | 266 | tRNA-dihydrouridine synthase B |
6ei9_B | 5e-26 | 347 | 594 | 27 | 266 | tRNA-dihydrouridine synthase B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM399263 | 0.0 | KM399263.1 Solanum lycopersicum FMN-linked oxidoreductases superfamily protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230876.1 | 0.0 | tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
Swissprot | Q9T0J6 | 0.0 | DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
TrEMBL | A0A3Q7FEA4 | 0.0 | A0A3Q7FEA4_SOLLC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] | ||||
STRING | Solyc01g110490.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8039 | 19 | 23 |
Publications ? help Back to Top | |||
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