PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g109980.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 646aa MW: 71883.3 Da PI: 4.9056

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g109980.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	411	448	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + Sopim01g109980.0.1 411 FEHflHPYPKDSEKIMLARQTGLTRSQVSNWFINARVR 448 554459******************************88 PP
2	BELL	126.2	1.2e-40	273	344	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qe+q+k +kLls+l+e+d+rY+qy++q+q+v+ssF++vag g+akpYt+lAl++iSrhFrcL+dai++qi Sopim01g109980.0.1 273 EKQEVQNKLTKLLSMLDEIDRRYRQYYHQMQIVVSSFDVVAGDGAAKPYTALALQTISRHFRCLRDAICDQI 344 689********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.2E-61	195	342	IPR006563	POX domain
Pfam	PF07526	6.6E-50	201	340	IPR006563	POX domain
PROSITE profile	PS50071	12.357	389	452	IPR001356	Homeobox domain
SMART	SM00389	3.6E-10	392	456	IPR001356	Homeobox domain
CDD	cd00086	2.67E-12	392	453	No hit	No description
SuperFamily	SSF46689	1.5E-17	393	459	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-29	395	458	IPR009057	Homeodomain-like
Pfam	PF05920	7.4E-18	409	448	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MATYFPSPSN QRDADQTFQY FRQSLPESYS EASNAPENMM VFMNYSSSGT YSDMLTGTSQ 60 QQHSCIDIPS IGATSSNTSQ QEVLSNLGES RMGIQDFSSW RDSRNEMLAD NFFQVAQNVQ 120 GQGLSLSLGS NIPSGIGISH VQSQNPNQGG GFNMSFGDGD NSQPKEQRNA DYFPPDHPGR 180 DLDAMKGYNS PYGTSSIART IPSSKYLKAA QYLLDEVVSV RKAIKEQNSK KELTKDSREP 240 DLDSKNISSD TPANGGSNPH ESKNNQSELS ATEKQEVQNK LTKLLSMLDE IDRRYRQYYH 300 QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAI CDQIRASRRS LGEQDASENS 360 KAIGISRLRF VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSVLRAWL FEHFLHPYPK 420 DSEKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDAKIDSN SSSEVAPRLA 480 SKDSKVEERG ELHQNTASEF EQYNSGQILE SKSYHEADAE MEGASNAETQ SQSGMENQTE 540 EPLPAMDNCT LFQDAFVQSN DRFSEFGSFG SGNVLPNGVS LTLGLQQGEG SNLPMSIETH 600 VSYVPLRADD MYSTAPTTMV PETAEFNCLD SGNRQQPFWL LPSAT*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MATYFPSPSN QRDADQTFQY FRQSLPESYS EASNAPENMM VFMNYSSSGT YSDMLTGTSQ  60
QQHSCIDIPS IGATSSNTSQ QEVLSNLGES RMGIQDFSSW RDSRNEMLAD NFFQVAQNVQ  120
GQGLSLSLGS NIPSGIGISH VQSQNPNQGG GFNMSFGDGD NSQPKEQRNA DYFPPDHPGR  180
DLDAMKGYNS PYGTSSIART IPSSKYLKAA QYLLDEVVSV RKAIKEQNSK KELTKDSREP  240
DLDSKNISSD TPANGGSNPH ESKNNQSELS ATEKQEVQNK LTKLLSMLDE IDRRYRQYYH  300
QMQIVVSSFD VVAGDGAAKP YTALALQTIS RHFRCLRDAI CDQIRASRRS LGEQDASENS  360
KAIGISRLRF VDQHIRQQRA LQQLGMMQQH AWRPQRGLPE SSVSVLRAWL FEHFLHPYPK  420
DSEKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EAGDAKIDSN SSSEVAPRLA  480
SKDSKVEERG ELHQNTASEF EQYNSGQILE SKSYHEADAE MEGASNAETQ SQSGMENQTE  540
EPLPAMDNCT LFQDAFVQSN DRFSEFGSFG SGNVLPNGVS LTLGLQQGEG SNLPMSIETH  600
VSYVPLRADD MYSTAPTTMV PETAEFNCLD SGNRQQPFWL LPSAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	398	456	5	63	Homeobox protein Meis2
3k2a_B	4e-16	398	456	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU686379	0.0	EU686379.1 Solanum etuberosum BEL30 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230877.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_010315320.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_025884521.1	0.0	BEL1-like homeodomain protein 7
Refseq	XP_025884523.1	0.0	BEL1-like homeodomain protein 7
Swissprot	O65685	1e-123	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A3Q7ETK9	0.0	A0A3Q7ETK9_SOLLC; Uncharacterized protein
STRING	Solyc01g109980.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10205	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-126	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]