PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g108940.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 373aa MW: 43605 Da PI: 6.6047 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.1 | 7.6e-14 | 8 | 93 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT.--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang.LkegDfvvFkldgrsefelvv 94 ++ + ++ +r+ +p ++a ++ +gk ++ + ++d+ ++ W + + +k g+ ++++GWk+F ++n+ L+ gDf++F +dg+++f ++v Sopim01g108940.0.1 8 IF--NPESSAKRMKIPSSYA-TYkNGK--LPRNVFFRDRFNNMWPMGV--TKIEGALYFENGWKKFIEDNNtLEYGDFMIFDYDGNETFDFKV 93 55..445566789*******.553555..7789***************..******************986489***********99995554 PP | |||||||
2 | B3 | 30.8 | 5.3e-10 | 245 | 313 | 12 | 83 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 ++++ ++p + +++++++ + ++++d+ gr++e k++y+k + r++l +GW++ ++ n ++ +D++ F+ Sopim01g108940.0.1 245 RRNQQYVPIDVVRDYKLE--LPPSMIIRDSAGREFETKVKYWKDG-RIWLVGGWRSICRWNLVEKNDSLQFT 313 567788999999999766..55679*****************996.899**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-16 | 3 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.193 | 3 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.47E-17 | 5 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-8 | 5 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-10 | 5 | 94 | No hit | No description |
Pfam | PF02362 | 2.1E-11 | 8 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-14 | 229 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-14 | 231 | 313 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.107 | 234 | 330 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.90E-7 | 235 | 313 | No hit | No description |
SMART | SM01019 | 0.0055 | 237 | 330 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-8 | 245 | 313 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MEKGFFRIFN PESSAKRMKI PSSYATYKNG KLPRNVFFRD RFNNMWPMGV TKIEGALYFE 60 NGWKKFIEDN NTLEYGDFMI FDYDGNETFD FKVLEMSGCV KEGAKCEKKK EVYVEHRKSV 120 EPKEKNRIGD NNDSSSDDDN ANNYMIEEEE SNVKEEVEKE EEEDREEKET MEEVEDEAEE 180 EEDEEEIETT QTFKKRRSGS KAGRRKAITC KVRNMIDRHG IDIFRSGSAT KPKNPYFVAK 240 IIAKRRNQQY VPIDVVRDYK LELPPSMIIR DSAGREFETK VKYWKDGRIW LVGGWRSICR 300 WNLVEKNDSL QFTTRIFSNN GLERQVKSTD MIKNQQASIY DRGSSVKGQK NTLTLQNSLN 360 RLLLTVKATQ LK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238499 | 0.0 | AC238499.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015089724.1 | 1e-177 | B3 domain-containing protein At5g60140-like | ||||
TrEMBL | M1AQ14 | 1e-107 | M1AQ14_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g108940.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1091 | 22 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-14 | B3 family protein |