PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g108130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 337aa    MW: 38579.1 Da    PI: 9.73
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g108130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-16127216198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k ++ps+v    +l lpk+f++ h   + +++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++    +
  Sopim01g108130.0.1 127 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSSDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSISHRLLKGDLLIFRLIEP--CK 209
                         889********************8884..34678****************888888....***********************9974..33 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         ++v ++r
  Sopim01g108130.0.1 210 MKVYIVR 216
                         5777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-19119218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22120218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-21125216No hitNo description
SMARTSM010192.2E-19127218IPR003340B3 DNA binding domain
PfamPF023625.6E-13127216IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843127218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEERNFIPVK RRTKSCKKRQ QQVEPHTLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP  60
KKPRSVKSKA KQVKSNHPRK AESHSIKRKG SKRTRINDLY DDVEAKYSVM ERAEKVLSSL  120
PDEFPSFAKC MLPSNVAHGF WLHLPKSFCN MHLPSSDTTV ILVDEWGNEY KTSYLLERNG  180
LSAGWRGFSI SHRLLKGDLL IFRLIEPCKM KVYIVRVNGQ EVVDAALCLM YWETLNTSTE  240
LDLVRKDKRK RKKAKHLAEP FFVDLSKPKE HVQNDSHCTV DLNVSPSEHR SENNSEDLDS  300
EVLQGSDVTN RLQSNEICCS ETSFLHDNPH KSVDCR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244252RKDKRKRKK
2248252RKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-113HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230782.10.0B3 domain-containing protein At5g42700
TrEMBLA0A3Q7ESP20.0A0A3Q7ESP2_SOLLC; Uncharacterized protein
STRINGSolyc01g108130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-38B3 family protein