PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g108120.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 296aa    MW: 33701.9 Da    PI: 9.7624
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g108120.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.4e-1664149194
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f k +++s+v+   +l+lp+ f++ h+  ++ ++t+tl des ++++ k+  ++++    l++GW++F  +++L egD++vF+l +  +  
  Sopim01g108120.0.1  64 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCKL- 147
                         89*********************9997..56889****************555555....9**********************8653333. PP

                         .EE CS
                  B3  92 lvv 94 
                          +v
  Sopim01g108120.0.1 148 -KV 149
                         .44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-1857155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-2159155IPR015300DNA-binding pseudobarrel domain
CDDcd100177.54E-2362153No hitNo description
PfamPF023622.4E-1364152IPR003340B3 DNA binding domain
PROSITE profilePS5086311.61764155IPR003340B3 DNA binding domain
SMARTSM010191.2E-1764155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKDRSLELKG WHKQVVCKKP KKLGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK  60
YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG  120
GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPVH  180
QRQHSISMKQ VGIKRQRLSS QEGDDYSTEN MLHKHSHSTN MFKNLDLPSK GLAYETLTIV  240
DAVKASKLSD PPNGTFSSWN TRPTELEQLE VRPFSSGYSI EPALTLSGAE MIFRP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-112HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230781.10.0B3 domain-containing protein At5g42700
RefseqXP_010315232.10.0B3 domain-containing protein At5g42700
TrEMBLA0A3Q7ESM60.0A0A3Q7ESM6_SOLLC; Uncharacterized protein
STRINGSolyc01g108120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-43B3 family protein