PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g107140.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 331aa    MW: 36664.7 Da    PI: 5.7975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g107140.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-102532931055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Sopim01g107140.0.1 253 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 293
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14242308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-12252297No hitNo description
PfamPF000105.7E-8253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGACPNEQQL PSSGLPNFWT NHESNIGGSS  60
EVSIFSSQHH TNSSIYHFPT STNHFQPMLL TTSMTMEHLP PTNNLIEADA VEFLNKQVNN  120
DSIESGENIM SESVLHGKSL QLGREYDQMH QPESSKKRSQ SPVDHKNKRS VKPKKNMKSS  180
VADDEETGNN NNNNTVLHRQ SSFSCCSEDE SNVSSYDIYG LASSDNSKGV SLPNGKSRAN  240
RGSATDPQSL YARKRRERIN ERLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS  300
SDDLWMYSPI AYNGMDIGLD LKIGIPNPKP *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231386.10.0transcription factor bHLH84-like
TrEMBLA0A3Q7FCB90.0A0A3Q7FCB9_SOLLC; Uncharacterized protein
STRINGSolyc01g107140.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-55bHLH family protein